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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31983138_31983257_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31983138 - 31983257
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GGTTAATTAACT
Flanking Amino Acid:
ARKFGVFKKECGCASCGRAF
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96.8
6.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73
0.52
0.9
66.4
35.7
Minor 5ss
26.9
-2.6
4.1
42.9
44.7
Minor BPS
63
0.49
1.8
80.56
40.1

Associated Gene:

Gene:
ZFYVE19
Ensembl Gene ID:
ENSAPLG00000000937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000960
31973094 - 31983311
10218