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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31991188_31992957_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31991188 - 31992957
Intron Length:
1770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCTTCAGCA
Flanking Amino Acid:
VAKINKLYKCNCCSSVLPKP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
57.8
0.24
1.8
71.35
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001265
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001297
31985810 - 32000752
14943