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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31993086_31993925_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31993086 - 31993925
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTATTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TGCGCCTTATTT
Flanking Amino Acid:
YDYSSVMHYGAYDFSSAPGK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
78.8
38.3
Major BPS
70
0.5
1
67
39.8
Major PPT
85.7
0.8
0.8
80.1
31.9
Minor 5ss
47.1
-0.3
2.8
62.8
42
Minor BPS
58.2
0.34
1.7
72.14
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001265
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001297
31985810 - 32000752
14943