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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31997339_31997863_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31997339 - 31997863
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAGAGGTA
5'SS Class:
major
3'SS Sequence:
TGCCTATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CATTGCCTAATA
Flanking Amino Acid:
TETDYVYVEHGCWSYFGKIG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
63.3
38.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76
0.58
0.8
73.6
35.9
Minor 5ss
20
-3.5
4.4
27.5
44.3
Minor BPS
49.9
-0
2.1
64.99
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001265
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001297
31985810 - 32000752
14943