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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31997976_31999411_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31997976 - 31999411
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCTCATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTTCTCATTC
Flanking Amino Acid:
KVPVNISSDFSLTERSWIAD
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.8
74.8
34.8
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
48.3
-0.1
1.8
57.34
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001265
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001297
31985810 - 32000752
14943