Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32008_33004_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32008 - 33004

Intron Length:

997

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTATGTGTT

5'SS Class:

major

3'SS Sequence:

TTTGTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

TGCCTCTTATTT

Flanking Amino Acid:

VDPKKLMDSLEWMDDGLVND

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

71.6

38.4

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

88.3

0.86

0.7

84.9

29.9

Minor 5ss

-0.4

3.2

62.7

43.1

Minor BPS

55.5

0.25

1.6

69.46

41.9

Associated Gene:

Gene:

FAR1

Ensembl Gene ID:

ENSAPLG00000005107

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037805

6668 - 51974

45307

ENSAPLT00000005315

16966 - 51974

35009