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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32036021_32049917_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32036021 - 32049917
Intron Length:
13897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTCTCCAATT
Flanking Amino Acid:
GRCAGRRGMKGPSLETQMVE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.4
0.8
0.8
79.9
32.3
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
54.6
0.22
1.9
76.58
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029061
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026503
32035688 - 32222893
187206