Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32050009_32222379_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32050009 - 32222379

Intron Length:

172371

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTGA

5'SS Class:

major

3'SS Sequence:

TCTGTCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CTCTGCTGACTT

Flanking Amino Acid:

PPHLREEPPEDASKDHPQPQ

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

60.1

41.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

75.6

0.58

0.8

31.7

Minor 5ss

34.4

-1.8

3.5

47.2

48.2

Minor BPS

45.7

-0.2

2.1

63.83

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029061

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026503

32035688 - 32222893

187206