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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3216041_3223140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3216041 - 3223140
Intron Length:
7100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGACT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTACTAAATG
Flanking Amino Acid:
LLATCSAWSLDSSLWKSIHK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.6
40.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
33.2
-1.9
3.5
49.6
46.4
Minor BPS
56
0.05
1.9
65.08
42.9

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008966
3215995 - 3315142
99148