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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3216875_3223140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3216875 - 3223140
Intron Length:
6266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAAAT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTACTAAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
73.7
36.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
34.1
-1.8
3.2
49.2
46.6
Minor BPS
56
0.05
1.9
65.08
42.9

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018703
3216491 - 3315142
98652