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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3220055_3223140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3220055 - 3223140
Intron Length:
3086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTAAGTT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTACTAAATG
Flanking Amino Acid:
MRPDSSLWKSIHK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1
62.8
35.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
36.5
-1.5
3.6
52
47.1
Minor BPS
56
0.05
1.9
65.08
42.9

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044544
3219978 - 3315218
95241