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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32265201_32267373_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32265201 - 32267373
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATGCCTGATTT
Flanking Amino Acid:
YALLACGVIIGGFWLGVDQE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
54.1
0.21
1.8
74.02
42.9

Associated Gene:

Gene:
SLC35C1
Ensembl Gene ID:
ENSAPLG00000004820
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004956
32264666 - 32268943
4278