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Intron Name: Anas_platyrhynchos_platyrhynchos_5_32309703_32311004_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

32309703 - 32311004

Intron Length:

1302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCATGTGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

100

1.24

0.5

100

Major PPT

87.2

0.84

0.7

84.6

30.3

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

49.1

0.01

2.2

77.51

Associated Gene:

Gene:

LARGE2

Ensembl Gene ID:

ENSAPLG00000002855

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002943

32308985 - 32325416

16432