Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32321583_32321723_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32321583 - 32321723

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCTGGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAA

U12 Branch Point Sequence:

TCGGTCTGAAAA

Flanking Amino Acid:

PKQRVVHKCELLHVAIVCAG

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

64.4

0.36

1.2

57.3

41.7

Major PPT

68.1

0.41

1.1

65.3

41.1

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

48.7

-0.1

1.7

56.62

42.7

Associated Gene:

Gene:

LARGE2

Ensembl Gene ID:

ENSAPLG00000002855

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002943

32308985 - 32325416

16432