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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32324067_32324330_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32324067 - 32324330
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCC
5'SS Class:
major
3'SS Sequence:
CTCTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTCCTTCACA
Flanking Amino Acid:
VTLVAQLSMDRLQMLEAICK
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.4
40.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.6
0.69
0.7
75.1
27
Minor 5ss
38.4
-1.3
3.3
53.8
43.4
Minor BPS
68
0.56
1.8
74.7
43.3

Associated Gene:

Gene:
LARGE2
Ensembl Gene ID:
ENSAPLG00000002855
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002943
32308985 - 32325416
16432