About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32339983_32340313_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32339983 - 32340313
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTTCTTGATG
Flanking Amino Acid:
IVHSYIAYKAAKEEEKQKLL
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
70.7
0.51
1.2
70.64
36.7

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735