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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32340390_32342046_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32340390 - 32342046
Intron Length:
1657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GATTATTTACCA
Flanking Amino Acid:
MWICPKCQDQMLKKEEAIPW
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
87.4
0.84
0.7
85.1
28.9
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
54.5
0.14
1.8
66.29
39.8

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735