Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32348132_32350568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32348132 - 32350568

Intron Length:

2437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGTTAATATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTTTTGTTAATA

Flanking Amino Acid:

STMHPGTRKRGRPPKYNTVL

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.3

Major BPS

84.4

0.85

34.5

Major PPT

69.3

0.44

63.7

41.9

Minor 5ss

26.7

-2.7

3.3

37.5

47.2

Minor BPS

61.4

0.35

2.1

74.1

38.6

Associated Gene:

Gene:

PHF21A

Ensembl Gene ID:

ENSAPLG00000002448

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002487

32339837 - 32425571

85735