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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32352005_32353139_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32352005 - 32353139
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTCTTCTCACA
Flanking Amino Acid:
PKPKREENPQKLAFMVSLGL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64
36.2
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
88.1
0.86
0.6
83.8
24.5
Minor 5ss
41.4
-1
3.3
55.5
48.7
Minor BPS
48.4
-0.1
2
68.77
37.7

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735