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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32353239_32355017_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32353239 - 32355017
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGATA
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATCACTGAATG
Flanking Amino Acid:
QISKPNIEKQTIKPHVEAEE
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72.2
38.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
34.1
-1.8
3.5
48.2
47.5
Minor BPS
52.7
-0
1.7
60.62
40.6

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735