About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32355315_32357754_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32355315 - 32357754
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTTTTTACTT
Flanking Amino Acid:
LTPRPNFLPQVRPKPVAQNN
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.4
0.77
0.7
80.8
30.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
63.8
0.51
1.6
78.3
39.3

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735