About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32357842_32359608_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32357842 - 32359608
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TATGTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ACTTATTTAACT
Flanking Amino Acid:
QIVAKNTVTLQVQATPQPIK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
83.3
0.75
0.9
76.8
37.1
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
72
0.77
1.4
83.17
37.9

Associated Gene:

Gene:
PHF21A
Ensembl Gene ID:
ENSAPLG00000002448
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002487
32339837 - 32425571
85735