About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32431673_32436372_R

Intron Information:

Intron Rank:
139687
Intron Class:
major
Intron Phase:
Intron Coordinates:
32431673 - 32436372
Intron Length:
4700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTTCAGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.3
0.79
0.7
81.2
30.6
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
49.2
0.02
2.4
78.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022600
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047605
32427223 - 32436375
9153