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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3255166_3257728_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3255166 - 3257728
Intron Length:
2563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTATATCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTGTCTTATAT
Flanking Amino Acid:
IELVFTHEAQNLLRQIDLSD
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
79.2
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
1
66
39.5
Minor 5ss
34.2
-1.8
2.8
42
44.5
Minor BPS
49.6
0.05
1.8
66.72
44.2

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044544
3219978 - 3315218
95241
ENSAPLT00000018703
3216491 - 3315142
98652
ENSAPLT00000008966
3215995 - 3315142
99148