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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32577760_32578384_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32577760 - 32578384
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCC
Flanking Amino Acid:
GDQNCMAKLLQKPLSRRKCA
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
0.8
69.8
36.3
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
63.2
0.39
1.8
78.26
37.5

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935