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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3257843_3263879_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3257843 - 3263879
Intron Length:
6037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTTTTATGATTT
Flanking Amino Acid:
GAHLCRIIAKEGGVVALFKI
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
47.4
-0.1
1.9
69.3
42

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044544
3219978 - 3315218
95241
ENSAPLT00000018703
3216491 - 3315142
98652
ENSAPLT00000008966
3215995 - 3315142
99148