About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32578463_32578786_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32578463 - 32578786
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCAATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTACTGATTC
Flanking Amino Acid:
HTPCIEQLEKINFRCKPSFR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
69.6
0.44
0.9
61.8
38.7
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
54.7
0.13
1.9
72.45
38.6

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935