About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32578844_32579927_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32578844 - 32579927
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
RESGSRNVREPIVVRHHWVH
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.3
0.82
0.6
85.5
21.9
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935