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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32580499_32580795_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32580499 - 32580795
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTGCTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
AGCAGCTGAGTT
Flanking Amino Acid:
AISCSWCKQAYHSKVSCFML
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.6
37
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
81.6
0.71
0.8
73.1
37.3
Minor 5ss
33.7
-1.9
2.9
40.3
45.6
Minor BPS
41
-0.6
2
52.8
42.2

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935