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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32580913_32580995_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32580913 - 32580995
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
AGCTCCTCACAC
Flanking Amino Acid:
TWILRVRRPQNPMKSSKKKK
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.4
0.73
0.9
73.6
41.8
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
46.7
-0.2
1.9
55.25
42.5

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935