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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32585396_32585608_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32585396 - 32585608
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GTGTTGTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGAAT
U12 Branch Point Sequence:
GCAGCCTGAATG
Flanking Amino Acid:
KDLAKHVKLVCDGTDLTPKI
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67
38.3
Major BPS
49.8
-0
1.4
61.2
42
Major PPT
75.4
0.57
1
65.9
45.3
Minor 5ss
33.4
-1.9
3.4
46.1
43.6
Minor BPS
49.4
-0.1
1.7
49.74
44.2

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935