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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32586442_32586728_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32586442 - 32586728
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
TGACTGCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCCTTCCTGACT
Flanking Amino Acid:
KRRNSMPLLNDQQPVPERLR
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.1
60.5
39.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
65.8
0.36
1
58.8
41.9
Minor 5ss
41.3
-1
3
49.6
40.9
Minor BPS
59.1
0.37
1.7
75.14
42

Associated Gene:

Gene:
DGKZ
Ensembl Gene ID:
ENSAPLG00000015859
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016638
32576010 - 32595944
19935