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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32601577_32601653_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32601577 - 32601653
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
GCTCCCACCACT
Flanking Amino Acid:
VTTEAGKAKKDKVKKDGSEC
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
50
0
1.2
61.8
35.9
Major PPT
78.4
0.64
0.8
71.9
32.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.2
-0.3
2.2
63.75
45.7

Associated Gene:

Gene:
MDK
Ensembl Gene ID:
ENSAPLG00000015677
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016345
32601498 - 32602202
705