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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32602053_32602176_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32602053 - 32602176
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCATCGGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
GCCGTGCTAACG
Flanking Amino Acid:
CASKMKSKSKAKKGKGKD*
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
68.9
0.43
1
61.6
39.7
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
38.8
-0.9
2.3
39.41
44.4

Associated Gene:

Gene:
MDK
Ensembl Gene ID:
ENSAPLG00000015677
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016345
32601498 - 32602202
705