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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32622189_32630597_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32622189 - 32630597
Intron Length:
8409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCAAC
U12 Branch Point Sequence:
CGTGCACCAACG
Flanking Amino Acid:
QESASAGTGEGEGPEYGASG
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
46.8
-0.2
1.1
52
30.4
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
40.6
-0.8
2.1
46.5
45.6

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665