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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32630792_32632372_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32630792 - 32632372
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
CCGGTCTGATTT
Flanking Amino Acid:
HSSSRSTERPGTSRATWRTD
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
32.9
-2
3
36.4
40.6
Minor BPS
43.1
-0.4
1.7
51.09
44.2

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665