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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32663310_32663779_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32663310 - 32663779
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
CAATCTTTGAGA
Flanking Amino Acid:
LGEMLYTKRFGPNAISVSLS
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.4
0.73
0.8
77.7
36
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
53.6
0.1
1.6
59.31
40.8

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665