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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32672348_32697516_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32672348 - 32697516
Intron Length:
25169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
ACCTCTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATTTCTACCT
Flanking Amino Acid:
THSSVNRVLAGAVIGDGQSA
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
70.1
0.45
0.8
64.8
30.1
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
52.7
0.16
1.9
76.75
40

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665