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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32736378_32736662_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32736378 - 32736662
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGAG
5'SS Class:
major
3'SS Sequence:
CTCCTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAC
U12 Branch Point Sequence:
TCTGGTGCCACT
Flanking Amino Acid:
MLSSRSSGIQTEPYQPPEQA
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.1
38.7
Major BPS
45.1
-0.3
1.4
52.4
43.3
Major PPT
76.7
0.6
0.9
72
32.5
Minor 5ss
22.9
-3.1
3.3
27.9
44.1
Minor BPS
34.3
-1.1
2.6
54.65
47.7

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665