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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32738196_32738246_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
32738196 - 32738246
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GAAAAATGGTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
TTGTCTGGAAAA
Flanking Amino Acid:
VKTASEMERVRFGEYRFFLW
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
47.7
-0.1
1.2
40.1
47.3
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
47.6
-0.1
2.2
65.19
41.3

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665