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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32739969_32740224_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32739969 - 32740224
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
ACACTTGCAACA
Flanking Amino Acid:
KTRWMKWEGKKVELPDSPRS
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
83.2
0.75
0.9
80.8
36.8
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
41.3
-0.6
2
47.51
36.5

Associated Gene:

Gene:
AMBRA1
Ensembl Gene ID:
ENSAPLG00000015643
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016315
32621695 - 32740359
118665