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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32748491_32749093_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32748491 - 32749093
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TCACTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTCTTTTCACT
Flanking Amino Acid:
NALHKDGWLLGDSSFFLRTW
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
65.4
46
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.5
0.33
1
58.5
37
Minor 5ss
33.8
-1.8
2.9
38.2
40.8
Minor BPS
57.7
0.32
1.8
76.22
41

Associated Gene:

Gene:
HARBI1
Ensembl Gene ID:
ENSAPLG00000015636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016295
32748114 - 32749763
1650