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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32754292_32754909_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32754292 - 32754909
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GAGCTCAGATCT
Flanking Amino Acid:
DKFIKFFALKTVQVIVQARL
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
40.9
-0.6
1.8
53.38
41

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040168
32754223 - 32768260
14038
ENSAPLT00000021542
32754223 - 32768260
14038
ENSAPLT00000015706
32754223 - 32768260
14038