Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32757339_32757878_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32757339 - 32757878

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTAACCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

CATTCTTTAACC

Flanking Amino Acid:

GEVQLSGLGEGFQTVRVGTV

Intron Amino Acid Position:

167

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

77.5

33.3

Major BPS

80.4

0.76

80.3

31.8

Major PPT

77.8

0.63

0.9

70.1

36.1

Minor 5ss

46.4

-0.4

3.1

63.9

47.7

Minor BPS

79.5

0.91

1.1

79.29

Associated Gene:

Gene:

ATG13

Ensembl Gene ID:

ENSAPLG00000015034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040168

32754223 - 32768260

14038

ENSAPLT00000021542

32754223 - 32768260

14038

ENSAPLT00000015706

32754223 - 32768260

14038