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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32758419_32759204_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32758419 - 32759204
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
CCCTTCCTACTT
Flanking Amino Acid:
SSSPMHPCNYRAGEDNGAVY
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
76.7
0.6
0.8
74.6
29
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
45.7
-0.2
1.9
58.92
45.3

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015706
32754223 - 32768260
14038
ENSAPLT00000040168
32754223 - 32768260
14038
ENSAPLT00000021542
32754223 - 32768260
14038