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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32759296_32763210_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32759296 - 32763210
Intron Length:
3915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTCTCTTCTTT
Flanking Amino Acid:
TSFSTSPPSQLSSSRLSYQP
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.3
0.77
0.6
84.4
23.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
42.9
-0.4
3.5
76.56
40.7

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021542
32754223 - 32768260
14038