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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32761867_32763210_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32761867 - 32763210
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTCTCTTCTTT
Flanking Amino Acid:
PVMGLAFSHQLSSSRLSYQP
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.3
0.77
0.6
84.4
23.5
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
42.9
-0.4
3.5
76.56
40.7

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015706
32754223 - 32768260
14038