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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32766837_32767308_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32766837 - 32767308
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTGATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGTTTTTGATT
Flanking Amino Acid:
THDDFVMIDFKPAFSKDDIL
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
69.3
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82
0.72
0.8
74.7
40
Minor 5ss
36.5
-1.5
3.2
51
39.8
Minor BPS
64.5
0.54
1.2
74.33
37.3

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040168
32754223 - 32768260
14038
ENSAPLT00000021542
32754223 - 32768260
14038
ENSAPLT00000015706
32754223 - 32768260
14038