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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32767438_32768182_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32767438 - 32768182
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAAC
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTGCTCTTACA
Flanking Amino Acid:
IGAQSMAEDLDSLPEKLAVH
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
67.5
37.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
38.8
-1.3
3.1
47.8
42.7
Minor BPS
51
0.02
2.1
71.87
40.1

Associated Gene:

Gene:
ATG13
Ensembl Gene ID:
ENSAPLG00000015034
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021542
32754223 - 32768260
14038
ENSAPLT00000015706
32754223 - 32768260
14038
ENSAPLT00000040168
32754223 - 32768260
14038