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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32776180_32776787_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32776180 - 32776787
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
GGATTCACAACG
Flanking Amino Acid:
LHLLTAFLVQVSAHSDRNKM
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
70.8
0.47
0.8
66.6
28.6
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
46.5
-0.4
1.9
51.32
42.2

Associated Gene:

Gene:
ARHGAP1
Ensembl Gene ID:
ENSAPLG00000014489
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015158
32776000 - 32795291
19292